track cytoBandIdeo longLabel Chromosome ideogram with cytogenetic bands @ 50kb intervals shortLabel cytoBandIdeo50 bigDataUrl annotations/cytoBandIdeo.bigBed visibility dense type bigBed track scaffold_gaps type bigBed 3 shortLabel scaffold_gaps longLabel scaffold_gaps in the assembly - filled with Ns maxWindowToDraw 10000000 maxItems 1000000 visibility pack group Annotations bigDataUrl annotations/scaffold_gaps.bb track VARIATIONS compositeTrack on priority 30 shortLabel Variation tracks longLabel Variation tracks - SNV + SV from ONT and Illumina reads type vcfTabix group Annotations visibility squish allButtonPair on track repeatMasker_ compositeTrack on shortLabel RepeatMasker longLabel Repeate Elements by RepeatMasker group Annotations priority 20 visibility dense type bed 3 . allButtonPair on dragAndDrop subTracks track repeatMasker_DNA parent repeatMasker_ mouseOver $name family=$family SWscore=$SmithWatermanScore shortLabel DNA longLabel DNA Repeate Elements by RepeatMasker priority 21 spectrum on maxWindowToDraw 10000000 colorByStrand 0,114,178 213,94,0 type bigBed 6 + bigDataUrl annotations/RepeatMasker/DNA.bb track repeatMasker_LINE parent repeatMasker_ mouseOver $name family=$family SWscore=$SmithWatermanScore shortLabel LINE longLabel LINE Repeate Elements by RepeatMasker priority 22 spectrum on maxWindowToDraw 10000000 colorByStrand 0,114,178 213,94,0 type bigBed 6 + bigDataUrl annotations/RepeatMasker/LINE.bb track repeatMasker_LTR parent repeatMasker_ mouseOver $name family=$family SWscore=$SmithWatermanScore shortLabel LTR longLabel LTR Repeate Elements by RepeatMasker priority 23 spectrum on maxWindowToDraw 10000000 colorByStrand 0,114,178 213,94,0 type bigBed 6 + bigDataUrl annotations/RepeatMasker/LTR.bb track repeatMasker_Low_complexity parent repeatMasker_ mouseOver $name family=$family SWscore=$SmithWatermanScore shortLabel Low_complexity longLabel Low_complexity Repeate Elements by RepeatMasker priority 24 spectrum on maxWindowToDraw 10000000 colorByStrand 0,114,178 213,94,0 type bigBed 6 + bigDataUrl annotations/RepeatMasker/Low_complexity.bb track repeatMasker_Other parent repeatMasker_ mouseOver $name family=$family SWscore=$SmithWatermanScore shortLabel Other longLabel Other Repeate Elements by RepeatMasker priority 25 spectrum on maxWindowToDraw 10000000 colorByStrand 0,114,178 213,94,0 type bigBed 6 + bigDataUrl annotations/RepeatMasker/Other.bb track repeatMasker_RNA parent repeatMasker_ mouseOver $name family=$family SWscore=$SmithWatermanScore shortLabel RNA longLabel RNA Repeate Elements by RepeatMasker priority 26 spectrum on maxWindowToDraw 10000000 colorByStrand 0,114,178 213,94,0 type bigBed 6 + bigDataUrl annotations/RepeatMasker/RNA.bb track repeatMasker_Satellite parent repeatMasker_ mouseOver $name family=$family SWscore=$SmithWatermanScore shortLabel Satellite longLabel Satellite Repeate Elements by RepeatMasker priority 27 spectrum on maxWindowToDraw 10000000 colorByStrand 0,114,178 213,94,0 type bigBed 6 + bigDataUrl annotations/RepeatMasker/Satellite.bb track repeatMasker_Simple parent repeatMasker_ mouseOver $name family=$family SWscore=$SmithWatermanScore shortLabel Simple longLabel Simple Repeate Elements by RepeatMasker priority 28 spectrum on maxWindowToDraw 10000000 colorByStrand 0,114,178 213,94,0 type bigBed 6 + bigDataUrl annotations/RepeatMasker/Simple.bb track repeatMasker_DNA_internalDatabase parent repeatMasker_ mouseOver $name family=$family SWscore=$SmithWatermanScore shortLabel DNA longLabel DNA Repeate Elements by RepeatMasker using the Brennecke-Lab TE consensus as library priority 21 spectrum on maxWindowToDraw 10000000 colorByStrand 0,114,178 213,94,0 type bigBed 6 + bigDataUrl annotations/RepeatMasker/internalDATABASE_DNA.bb track repeatMasker_LINE_internalDatabase parent repeatMasker_ mouseOver $name family=$family SWscore=$SmithWatermanScore shortLabel LINE longLabel LINE Repeate Elements by RepeatMasker using the Brennecke-Lab TE consensus as 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transcripts assembled from Illumna and ONT reads group Debugging visibility hide maxWindowToDraw 10000000 colorByStrand 0,114,178 213,94,0 type bigGenePred bigDataUrl annotations/de-novo-transcripts.bb track de-novo-transcripts-ONT shortLabel ONT-de-novo longLabel Nanopore reads used for de-novo transcript prediction group Debugging visibility hide maxWindowToDraw 10000000 maxItems 1000000 bamColorMode strand type bam bigDataUrl annotations/de-novo-transcripts.reads.ONT.bam track de-novo-transcripts-Illumina-coverage container multiWig aggregate transparentOverlay group Debugging showSubtrackColorOnUi on shortLabel ILL-de-novo boxedCfg on autoScale on alwaysZero on longLabel Illumina reads used for de-novo transcript prediction type bigWig visibility hide maxHeightPixels 100:50:8 track de-novo-transcripts-Illumina-coverage_+ type bigWig bigDataUrl annotations/de-novo-transcripts.reads.Illumina.sense.bw shortLabel ILL-de-novo_+ longLabel Illumina reads used for de-novo transcript 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maxWindowToDraw 10000000 type vcfTabix parent VARIATIONS bigDataUrl annotations/VARIATIONS/ONT.CLAIR3.het.vcf.gz track SNV_ONT_pepper-deepvariant_hom shortLabel homSNV_pepper-deepvariant_ONT longLabel homozygous SNVs called using pepper-deepvariant and ONT reads priority 32 visibility squish maxWindowToDraw 10000000 type vcfTabix parent VARIATIONS bigDataUrl annotations/VARIATIONS/ONT.pepper-deepvariant.hom.vcf.gz track SNV_ONT_pepper-deepvariant_het shortLabel hetSNV_pepper-deepvariant_ONT longLabel heterozygous SNVs called using pepper-deepvariant and ONT reads priority 35 visibility squish maxWindowToDraw 10000000 type vcfTabix parent VARIATIONS bigDataUrl annotations/VARIATIONS/ONT.pepper-deepvariant.het.vcf.gz track SV_ONT_cuteSV_hom shortLabel homSV_cuteSV_ONT longLabel homozygous SVs called using cuteSV and ONT reads priority 36 visibility squish maxWindowToDraw 10000000 type vcfTabix parent VARIATIONS bigDataUrl annotations/VARIATIONS/ONT.cuteSV.hom.vcf.gz track SV_ONT_cuteSV_het shortLabel hetSV_cuteSV_ONT longLabel heterozygous SVs called using cuteSV and ONT reads priority 38 visibility squish maxWindowToDraw 10000000 type vcfTabix parent VARIATIONS bigDataUrl annotations/VARIATIONS/ONT.cuteSV.het.vcf.gz track SV_ONT_sniffles_hom shortLabel homSV_sniffles_ONT longLabel homozygous SVs called using sniffles and ONT reads priority 37 visibility squish maxWindowToDraw 10000000 type vcfTabix parent VARIATIONS bigDataUrl annotations/VARIATIONS/ONT.sniffles.hom.vcf.gz track SV_ONT_sniffles_het shortLabel hetSV_sniffles_ONT longLabel heterozygous SVs called using sniffles and ONT reads priority 39 visibility squish maxWindowToDraw 10000000 type vcfTabix parent VARIATIONS bigDataUrl annotations/VARIATIONS/ONT.sniffles.het.vcf.gz track mapped-transcripts shortLabel genes-mapped longLabel gene annotation created from FlyBase sequences by alignment priority 1 group Debugging spectrum on vidibility hide maxWindowToDraw 10000000 colorByStrand 0,114,178 213,94,0 type bigGenePred bigDataUrl annotations/mapped-genes.bb track HQmergedAnnotations shortLabel HQ-Annotations longLabel high quality transcript annotations merged from different approaches group Annotations priority 10 visibility pack maxWindowToDraw 10000000 mouseOver source $annotationSource reason $mergeReason colorByStrand 0,114,178 213,94,0 searchIndex name searchTrix annotations/merged-genes.ix type bigGenePred bigDataUrl annotations/HQmergedAnnotations.bb track mappedONT_RNA superTrack on hide shortLabel ONT_RNAseq longLabel mapped OSC Nanopore RNAseq reads group Long-Reads track mappedONT_RNA_2020-12-15_R9.4_RNA002_OSC-siPiwi_directRNA type bam shortLabel ONTreads_primaryALN longLabel ONT RNAseq reads from 2020-12-15_R9.4_RNA002_OSC-siPiwi_directRNA maxWindowToDraw 10000000 maxItems 1000000 bamColorMode strand visibility squish parent mappedONT_RNA bigDataUrl annotations/ONT/2020-12-15_R9.4_RNA002_OSC-siPiwi_directRNA.bam track 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longLabel gaps determined with a cutoff of <10 maxWindowToDraw 100000000 maxItems 1000000 bamColorMode strand visibility pack parent GAPs bigDataUrl annotations/gaps.bb track GAPs_resected_10 type bigBed shortLabel resectedGAPs longLabel gaps determined with a cutoff of <10 using read-alignments trimmed back by 100nt maxWindowToDraw 100000000 maxItems 1000000 bamColorMode strand visibility pack parent GAPs bigDataUrl annotations/gaps.resected.bb track OSC_specific_3ends superTrack on show boxedCfg on shortLabel OSC_specific_3ends longLabel OSC specific 3' UTR ends determined from ONT direct RNAseq reads group Annotations track 3end-quantified container multiWig showSubtrackColorOnUi on shortLabel 3' UTR ends-quantified [%] boxedCfg on viewLimits -100:100 alwaysZero on longLabel OSC mRNA 3UTR ends identified and quantified using ONT direct RNA sequencing - shown as [%] of total 3' ends per gene type bigWig aggregate solidOverlay visibility full parent OSC_specific_3ends maxHeightPixels 100:50:8 track 3end-quantified_sense shortLabel sense 3' Ends [%] longLabel OSC sense mRNA 3UTR ends identified and quantified using ONT direct RNA sequencing - shown as [%] of total 3' ends per gene visibility full alwaysZero on type bigWig color 0,114,178 group Annotations parent 3end-quantified bigDataUrl annotations/3ends.quantified.sense.bw track 3end-quantified_antisense shortLabel antisense 3' Ends [%] longLabel OSC antisense mRNA 3UTR ends identified and quantified using ONT direct RNA sequencing - shown as [%] of total 3' ends per gene visibility full alwaysZero on type bigWig color 213,94,0 altColor 213,94,0 group Annotations parent 3end-quantified bigDataUrl annotations/3ends.quantified.antisense.bw track uniqueness compositeTrack on boxedCfg on shortLabel genome unique regions longLabel genome unique-regions in the genome predicted with different read-size and MM settings type bigBed leftLabels on visibility squish group Annotations allButtonPair on hideEmptySubtracks off 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hide maxWindowToDraw 10000000 colorByStrand 115,235,174 140,101,211 type bigBed 6 parent uniqueness off bigDataUrl annotations/uniqueness/25mer.2MM.bb track uniquness_100mer_0 shortLabel uniq_100mer_0 longLabel genome unique regions for 100mers alligned allowing 0MM -best -stratum priority 67 visibility squish maxWindowToDraw 10000000 colorByStrand 115,235,174 140,101,211 type bigBed 6 parent uniqueness on bigDataUrl annotations/uniqueness/100mer.0MM.bb track uniquness_50mer_2 shortLabel uniq_50mer_2 longLabel genome unique regions for 50mers alligned allowing 2MM -best -stratum priority 66 visibility hide maxWindowToDraw 10000000 colorByStrand 115,235,174 140,101,211 type bigBed 6 parent uniqueness off bigDataUrl annotations/uniqueness/50mer.2MM.bb track uniquness_25mer_3 shortLabel uniq_25mer_3 longLabel genome unique regions for 25mers alligned allowing 3MM -best -stratum priority 63 visibility hide maxWindowToDraw 10000000 colorByStrand 115,235,174 140,101,211 type bigBed 6 parent 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#################################################################################################### #RNAseq track RNAseq superTrack on show boxedCfg on shortLabel RNAseq-tracks longLabel RNAseq-tracks group Data-tracks track RNAseq_siLuc_unique container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel RNAseq_siLuc_unique boxedCfg on autoScale on alwaysZero on longLabel 4day siGFP knock down - average from 3 replicates - PolyA selected RNAseq - genome unique mappers type bigWig visibility full parent RNAseq windowingFunction mean maxHeightPixels 100:50:8 track RNAseq_siLuc_unique-sense shortLabel RNAseq_siLuc_unique-sense longLabel 4day siGFP knock down - average from 3 replicates - PolyA selected RNAseq - reads mapping uniquely to the top strand of the genome type bigWig parent RNAseq_siLuc_unique bigDataUrl data-tracks/RNAseq/siLuc_AVG_PA_R9994_uniq_sense.bw track RNAseq_siLuc_unique-antisense shortLabel RNAseq_siLuc_unique-antisense longLabel 4day siGFP knock down - average from 3 replicates - PolyA selected RNAseq - reads mapping uniquely to the bottom strand of the genome type bigWig parent RNAseq_siLuc_unique bigDataUrl data-tracks/RNAseq/siLuc_AVG_PA_R9994_uniq_antisense.bw track RNAseq_siLuc_Rep1_unique container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel RNAseq_siLuc_Rep1_unique boxedCfg on autoScale on alwaysZero on longLabel RNAseq_siLuc Rep1 type bigWig visibility hide parent RNAseq windowingFunction mean maxHeightPixels 100:50:8 track RNAseq_siLuc_Rep1_unique-sense shortLabel RNAseq_siLuc_Rep1_unique-sense longLabel 4day siGFP knock down - Replicate 1 - PolyA selected RNAseq - reads mapping uniquely to the top strand of the genome type bigWig parent RNAseq_siLuc_Rep1_unique bigDataUrl data-tracks/RNAseq/siLuc_Rep1_PA_R9994_uniq_sense.bw track RNAseq_siLuc_Rep1_unique-antisense shortLabel RNAseq_siLuc_Rep1_unique-antisense longLabel 4day siGFP knock down - Replicate 1 - PolyA selected RNAseq - reads mapping uniquely to the bottom strand of the genome type bigWig parent RNAseq_siLuc_Rep1_unique bigDataUrl data-tracks/RNAseq/siLuc_Rep1_PA_R9994_uniq_antisense.bw track RNAseq_siLuc_Rep2_unique container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel RNAseq_siLuc_Rep2_unique boxedCfg on autoScale on alwaysZero on longLabel RNAseq_siLuc Rep2 type bigWig visibility hide parent RNAseq windowingFunction mean maxHeightPixels 100:50:8 track RNAseq_siLuc_Rep2_unique-sense shortLabel RNAseq_siLuc_Rep2_unique-sense longLabel 4day siGFP knock down - Replicate 1 - PolyA selected RNAseq - reads mapping uniquely to the top strand of the genome type bigWig parent RNAseq_siLuc_Rep2_unique bigDataUrl data-tracks/RNAseq/siLuc_Rep2_PA_R9994_uniq_sense.bw track RNAseq_siLuc_Rep2_unique-antisense shortLabel RNAseq_siLuc_Rep2_unique-antisense longLabel 4day siGFP knock down - Replicate 1 - PolyA selected RNAseq - reads mapping uniquely to the bottom strand of the genome type bigWig parent RNAseq_siLuc_Rep2_unique bigDataUrl data-tracks/RNAseq/siLuc_Rep2_PA_R9994_uniq_antisense.bw track RNAseq_siLuc_Rep3_unique container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel RNAseq_siLuc_Rep3_unique boxedCfg on autoScale on alwaysZero on longLabel RNAseq_siLuc Rep3 type bigWig visibility hide parent RNAseq windowingFunction mean maxHeightPixels 100:50:8 track RNAseq_siLuc_Rep3_unique-sense shortLabel RNAseq_siLuc_Rep3_unique-sense longLabel 4day siGFP knock down - Replicate 1 - PolyA selected RNAseq - reads mapping uniquely to the top strand of the genome type bigWig parent RNAseq_siLuc_Rep3_unique bigDataUrl data-tracks/RNAseq/siLuc_Rep3_PA_R9994_uniq_sense.bw track RNAseq_siLuc_Rep3_unique-antisense shortLabel RNAseq_siLuc_Rep3_unique-antisense longLabel 4day siGFP knock down - Replicate 1 - PolyA selected RNAseq - reads mapping uniquely to the bottom strand of the genome type bigWig parent RNAseq_siLuc_Rep3_unique bigDataUrl data-tracks/RNAseq/siLuc_Rep3_PA_R9994_uniq_antisense.bw track RNAseq_siLuc_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel RNAseq_siLuc_all boxedCfg on autoScale on alwaysZero on longLabel 4day siGFP knock down - average from 3 replicates - PolyA selected RNAseq - all mappers type bigWig visibility full parent RNAseq windowingFunction mean maxHeightPixels 100:50:8 track RNAseq_siLuc_all-sense shortLabel RNAseq_siLuc_all-sense longLabel 4day siGFP knock down - average from 3 replicates - PolyA selected RNAseq - reads mapping allly to the top strand of the genome type bigWig parent RNAseq_siLuc_all bigDataUrl data-tracks/RNAseq/siLuc_AVG_PA_R9994_all_sense.bw track RNAseq_siLuc_all-antisense shortLabel RNAseq_siLuc_all-antisense longLabel 4day siGFP knock down - average from 3 replicates - PolyA selected RNAseq - reads mapping allly to the bottom strand of the genome type bigWig parent RNAseq_siLuc_all bigDataUrl data-tracks/RNAseq/siLuc_AVG_PA_R9994_all_antisense.bw track RNAseq_siLuc_Rep1_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel RNAseq_siLuc_Rep1_all boxedCfg on autoScale on alwaysZero on longLabel RNAseq_siLuc Rep1 type bigWig visibility hide parent RNAseq windowingFunction mean maxHeightPixels 100:50:8 track RNAseq_siLuc_Rep1_all-sense shortLabel RNAseq_siLuc_Rep1_all-sense longLabel 4day siGFP knock down - Replicate 1 - PolyA selected RNAseq - reads mapping allly to the top strand of the genome type bigWig parent RNAseq_siLuc_Rep1_all bigDataUrl data-tracks/RNAseq/siLuc_Rep1_PA_R9994_all_sense.bw track RNAseq_siLuc_Rep1_all-antisense shortLabel RNAseq_siLuc_Rep1_all-antisense longLabel 4day siGFP knock down - Replicate 1 - PolyA selected RNAseq - reads mapping allly to the bottom strand of the genome type bigWig parent RNAseq_siLuc_Rep1_all bigDataUrl data-tracks/RNAseq/siLuc_Rep1_PA_R9994_all_antisense.bw track RNAseq_siLuc_Rep2_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel RNAseq_siLuc_Rep2_all boxedCfg on autoScale on alwaysZero on longLabel RNAseq_siLuc Rep2 type bigWig visibility hide parent RNAseq windowingFunction mean maxHeightPixels 100:50:8 track RNAseq_siLuc_Rep2_all-sense shortLabel RNAseq_siLuc_Rep2_all-sense longLabel 4day siGFP knock down - Replicate 1 - PolyA selected RNAseq - reads mapping allly to the top strand of the genome type bigWig parent RNAseq_siLuc_Rep2_all bigDataUrl data-tracks/RNAseq/siLuc_Rep2_PA_R9994_all_sense.bw track RNAseq_siLuc_Rep2_all-antisense shortLabel RNAseq_siLuc_Rep2_all-antisense longLabel 4day siGFP knock down - Replicate 1 - PolyA selected RNAseq - reads mapping allly to the bottom strand of the genome type bigWig parent RNAseq_siLuc_Rep2_all bigDataUrl data-tracks/RNAseq/siLuc_Rep2_PA_R9994_all_antisense.bw track RNAseq_siLuc_Rep3_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel RNAseq_siLuc_Rep3_all boxedCfg on autoScale on alwaysZero on longLabel RNAseq_siLuc Rep3 type bigWig visibility hide parent RNAseq windowingFunction mean maxHeightPixels 100:50:8 track RNAseq_siLuc_Rep3_all-sense shortLabel RNAseq_siLuc_Rep3_all-sense longLabel 4day siGFP knock down - Replicate 1 - PolyA selected RNAseq - reads mapping allly to the top strand of the genome type bigWig parent RNAseq_siLuc_Rep3_all bigDataUrl data-tracks/RNAseq/siLuc_Rep3_PA_R9994_all_sense.bw track RNAseq_siLuc_Rep3_all-antisense shortLabel RNAseq_siLuc_Rep3_all-antisense longLabel 4day siGFP knock down - Replicate 1 - PolyA selected RNAseq - reads mapping allly to the bottom strand of the genome type bigWig parent RNAseq_siLuc_Rep3_all bigDataUrl data-tracks/RNAseq/siLuc_Rep3_PA_R9994_all_antisense.bw track RNAseq_siPiwi_unique container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel RNAseq_siPiwi_unique boxedCfg on autoScale on alwaysZero on longLabel 4day Piwi knock down - average from 3 replicates - PolyA selected RNAseq - genome unique mappers type bigWig visibility full parent RNAseq windowingFunction mean maxHeightPixels 100:50:8 track RNAseq_siPiwi_unique-sense shortLabel RNAseq_siPiwi_unique-sense longLabel 4day Piwi knock down - average from 3 replicates - PolyA selected RNAseq - reads mapping uniquely to the top strand of the genome type bigWig parent RNAseq_siPiwi_unique bigDataUrl data-tracks/RNAseq/siPiwi_AVG_PA_R9994_uniq_sense.bw track RNAseq_siPiwi_unique-antisense shortLabel RNAseq_siPiwi_unique-antisense longLabel 4day Piwi knock down - average from 3 replicates - PolyA selected RNAseq - reads mapping uniquely to the bottom strand of the genome type bigWig parent RNAseq_siPiwi_unique bigDataUrl data-tracks/RNAseq/siPiwi_AVG_PA_R9994_uniq_antisense.bw track RNAseq_siPiwi_Rep1_unique container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel RNAseq_siPiwi_Rep1_unique boxedCfg on autoScale on alwaysZero on longLabel RNAseq_siPiwi Rep1 type bigWig visibility hide parent RNAseq windowingFunction mean maxHeightPixels 100:50:8 track RNAseq_siPiwi_Rep1_unique-sense shortLabel RNAseq_siPiwi_Rep1_unique-sense longLabel 4day Piwi knock down - Replicate 1 - PolyA selected RNAseq - reads mapping uniquely to the top strand of the genome type bigWig parent RNAseq_siPiwi_Rep1_unique bigDataUrl data-tracks/RNAseq/siPiwi_Rep1_PA_R9994_uniq_sense.bw track RNAseq_siPiwi_Rep1_unique-antisense shortLabel RNAseq_siPiwi_Rep1_unique-antisense longLabel 4day Piwi knock down - Replicate 1 - PolyA selected RNAseq - reads mapping uniquely to the bottom strand of the genome type bigWig parent RNAseq_siPiwi_Rep1_unique bigDataUrl data-tracks/RNAseq/siPiwi_Rep1_PA_R9994_uniq_antisense.bw track RNAseq_siPiwi_Rep2_unique container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel RNAseq_siPiwi_Rep2_unique boxedCfg on autoScale on alwaysZero on longLabel RNAseq_siPiwi Rep2 type bigWig visibility hide parent RNAseq windowingFunction mean maxHeightPixels 100:50:8 track RNAseq_siPiwi_Rep2_unique-sense shortLabel RNAseq_siPiwi_Rep2_unique-sense longLabel 4day Piwi knock down - Replicate 1 - PolyA selected RNAseq - reads mapping uniquely to the top strand of the genome type bigWig parent RNAseq_siPiwi_Rep2_unique bigDataUrl data-tracks/RNAseq/siPiwi_Rep2_PA_R9994_uniq_sense.bw track RNAseq_siPiwi_Rep2_unique-antisense shortLabel RNAseq_siPiwi_Rep2_unique-antisense longLabel 4day Piwi knock down - Replicate 1 - PolyA selected RNAseq - reads mapping uniquely to the bottom strand of the genome type bigWig parent RNAseq_siPiwi_Rep2_unique bigDataUrl data-tracks/RNAseq/siPiwi_Rep2_PA_R9994_uniq_antisense.bw track RNAseq_siPiwi_Rep3_unique container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel RNAseq_siPiwi_Rep3_unique boxedCfg on autoScale on alwaysZero on longLabel RNAseq_siPiwi Rep3 type bigWig visibility hide parent RNAseq windowingFunction mean maxHeightPixels 100:50:8 track RNAseq_siPiwi_Rep3_unique-sense shortLabel RNAseq_siPiwi_Rep3_unique-sense longLabel 4day Piwi knock down - Replicate 1 - PolyA selected RNAseq - reads mapping uniquely to the top strand of the genome type bigWig parent RNAseq_siPiwi_Rep3_unique bigDataUrl data-tracks/RNAseq/siPiwi_Rep3_PA_R9994_uniq_sense.bw track RNAseq_siPiwi_Rep3_unique-antisense shortLabel RNAseq_siPiwi_Rep3_unique-antisense longLabel 4day Piwi knock down - Replicate 1 - PolyA selected RNAseq - reads mapping uniquely to the bottom strand of the genome type bigWig parent RNAseq_siPiwi_Rep3_unique bigDataUrl data-tracks/RNAseq/siPiwi_Rep3_PA_R9994_uniq_antisense.bw track RNAseq_siPiwi_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel RNAseq_siPiwi_all boxedCfg on autoScale on alwaysZero on longLabel 4day Piwi knock down - average from 3 replicates - PolyA selected RNAseq - all mappers type bigWig visibility full parent RNAseq windowingFunction mean maxHeightPixels 100:50:8 track RNAseq_siPiwi_all-sense shortLabel RNAseq_siPiwi_all-sense longLabel 4day Piwi knock down - average from 3 replicates - PolyA selected RNAseq - reads mapping allly to the top strand of the genome type bigWig parent RNAseq_siPiwi_all bigDataUrl data-tracks/RNAseq/siPiwi_AVG_PA_R9994_all_sense.bw track RNAseq_siPiwi_all-antisense shortLabel RNAseq_siPiwi_all-antisense longLabel 4day Piwi knock down - average from 3 replicates - PolyA selected RNAseq - reads mapping to the bottom strand of the genome type bigWig parent RNAseq_siPiwi_all bigDataUrl data-tracks/RNAseq/siPiwi_AVG_PA_R9994_all_antisense.bw track RNAseq_siPiwi_Rep1_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel RNAseq_siPiwi_Rep1_all boxedCfg on autoScale on alwaysZero on longLabel 4day Piwi knock down - Replicate 1 - PolyA selected RNAseq - all mappers type bigWig visibility hide parent RNAseq windowingFunction mean maxHeightPixels 100:50:8 track RNAseq_siPiwi_Rep1_all-sense shortLabel RNAseq_siPiwi_Rep1_all-sense longLabel 4day Piwi knock down - Replicate 1 - PolyA selected RNAseq - reads mapping allly to the top strand of the genome type bigWig parent RNAseq_siPiwi_Rep1_all bigDataUrl data-tracks/RNAseq/siPiwi_Rep1_PA_R9994_all_sense.bw track RNAseq_siPiwi_Rep1_all-antisense shortLabel RNAseq_siPiwi_Rep1_all-antisense longLabel 4day Piwi knock down - Replicate 1 - PolyA selected RNAseq - reads mapping allly to the bottom strand of the genome type bigWig parent RNAseq_siPiwi_Rep1_all bigDataUrl data-tracks/RNAseq/siPiwi_Rep1_PA_R9994_all_antisense.bw track RNAseq_siPiwi_Rep2_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel RNAseq_siPiwi_Rep2_all boxedCfg on autoScale on alwaysZero on longLabel 4day Piwi knock down - Replicate 2 - PolyA selected RNAseq - all mappers type bigWig visibility hide parent RNAseq windowingFunction mean maxHeightPixels 100:50:8 track RNAseq_siPiwi_Rep2_all-sense shortLabel RNAseq_siPiwi_Rep2_all-sense longLabel 4day Piwi knock down - Replicate 1 - PolyA selected RNAseq - reads mapping allly to the top strand of the genome type bigWig parent RNAseq_siPiwi_Rep2_all bigDataUrl data-tracks/RNAseq/siPiwi_Rep2_PA_R9994_all_sense.bw track RNAseq_siPiwi_Rep2_all-antisense shortLabel RNAseq_siPiwi_Rep2_all-antisense longLabel 4day Piwi knock down - Replicate 1 - PolyA selected RNAseq - reads mapping allly to the bottom strand of the genome type bigWig parent RNAseq_siPiwi_Rep2_all bigDataUrl data-tracks/RNAseq/siPiwi_Rep2_PA_R9994_all_antisense.bw track RNAseq_siPiwi_Rep3_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel RNAseq_siPiwi_Rep3_all boxedCfg on autoScale on alwaysZero on longLabel 4day Piwi knock down - Replicate 3 - PolyA selected RNAseq - all mappers type bigWig visibility hide parent RNAseq windowingFunction mean maxHeightPixels 100:50:8 track RNAseq_siPiwi_Rep3_all-sense shortLabel RNAseq_siPiwi_Rep3_all-sense longLabel 4day Piwi knock down - Replicate 1 - PolyA selected RNAseq - reads mapping allly to the top strand of the genome type bigWig parent RNAseq_siPiwi_Rep3_all bigDataUrl data-tracks/RNAseq/siPiwi_Rep3_PA_R9994_all_sense.bw track RNAseq_siPiwi_Rep3_all-antisense shortLabel RNAseq_siPiwi_Rep3_all-antisense longLabel 4day Piwi knock down - Replicate 1 - PolyA selected RNAseq - reads mapping allly to the bottom strand of the genome type bigWig parent RNAseq_siPiwi_Rep3_all bigDataUrl data-tracks/RNAseq/siPiwi_Rep3_PA_R9994_all_antisense.bw #################################################################################################### #sRNAseq track sRNAseq superTrack on show boxedCfg on shortLabel sRNAseq-tracks longLabel sRNAseq data prepared from HQK isolated Arognaute protein bound small RNAs group Data-tracks track sRNAseq_siLuc_unique container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel sRNAseq_siLuc_unique boxedCfg on autoScale on alwaysZero on color 230,159,0 altColor 254,220,143 longLabel control knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - average from 3 replicates type bigWig visibility full parent sRNAseq windowingFunction mean maxHeightPixels 100:50:8 track sRNAseq_siLuc_unique-sense shortLabel sRNAseq_siLuc_unique-sense longLabel control knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - average from 3 replicates - sense type bigWig parent sRNAseq_siLuc_unique bigDataUrl data-tracks/sRNAseq/siLuc_sRNA_uniq_sense.bw track sRNAseq_siLuc_unique-antisense shortLabel sRNAseq_siLuc_unique-antisense longLabel control knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - average from 3 replicates - antisense type bigWig parent sRNAseq_siLuc_unique bigDataUrl data-tracks/sRNAseq/siLuc_sRNA_uniq_antisense.bw track sRNAseq_siLuc_Rep1_unique container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel sRNAseq_siLuc_Rep1_unique boxedCfg on autoScale on alwaysZero on color 230,159,0 altColor 254,220,143 longLabel control knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 1 type bigWig visibility hide parent sRNAseq windowingFunction mean maxHeightPixels 100:50:8 track sRNAseq_siLuc_Rep1_unique-sense shortLabel sRNAseq_siLuc_Rep1_unique-sense longLabel control knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 1 - sense type bigWig parent sRNAseq_siLuc_Rep1_unique bigDataUrl data-tracks/sRNAseq/siLuc_sRNA_Rep1_uniq_sense.bw track sRNAseq_siLuc_Rep1_unique-antisense shortLabel sRNAseq_siLuc_Rep1_unique-antisense longLabel control knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 1 - antisense type bigWig parent sRNAseq_siLuc_Rep1_unique bigDataUrl data-tracks/sRNAseq/siLuc_sRNA_Rep1_uniq_antisense.bw track sRNAseq_siLuc_Rep2_unique container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel sRNAseq_siLuc_Rep2_unique boxedCfg on autoScale on alwaysZero on color 230,159,0 altColor 254,220,143 longLabel control knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 2 type bigWig visibility hide parent sRNAseq windowingFunction mean maxHeightPixels 100:50:8 track sRNAseq_siLuc_Rep2_unique-sense shortLabel sRNAseq_siLuc_Rep2_unique-sense longLabel control knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 2 - sense type bigWig parent sRNAseq_siLuc_Rep2_unique bigDataUrl data-tracks/sRNAseq/siLuc_sRNA_Rep2_uniq_sense.bw track sRNAseq_siLuc_Rep2_unique-antisense shortLabel sRNAseq_siLuc_Rep2_unique-antisense longLabel control knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 2 - antisense type bigWig parent sRNAseq_siLuc_Rep2_unique bigDataUrl data-tracks/sRNAseq/siLuc_sRNA_Rep2_uniq_antisense.bw track sRNAseq_siLuc_Rep3_unique container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel sRNAseq_siLuc_Rep3_unique boxedCfg on autoScale on alwaysZero on color 230,159,0 altColor 254,220,143 longLabel control knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 3 type bigWig visibility hide parent sRNAseq windowingFunction mean maxHeightPixels 100:50:8 track sRNAseq_siLuc_Rep3_unique-sense shortLabel sRNAseq_siLuc_Rep3_unique-sense longLabel control knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 3 - sense type bigWig parent sRNAseq_siLuc_Rep3_unique bigDataUrl data-tracks/sRNAseq/siLuc_sRNA_Rep3_uniq_sense.bw track sRNAseq_siLuc_Rep3_unique-antisense shortLabel sRNAseq_siLuc_Rep3_unique-antisense longLabel control knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 3 - antisense type bigWig parent sRNAseq_siLuc_Rep3_unique bigDataUrl data-tracks/sRNAseq/siLuc_sRNA_Rep3_uniq_antisense.bw track sRNAseq_siArmi_unique container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel sRNAseq_siArmi_unique boxedCfg on autoScale on alwaysZero on color 230,159,0 altColor 254,220,143 longLabel Armitage knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - average from 3 replicates type bigWig visibility full parent sRNAseq windowingFunction mean maxHeightPixels 100:50:8 track sRNAseq_siArmi_unique-sense shortLabel sRNAseq_siArmi_unique-sense longLabel Armitage knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - average from 3 replicates - sense type bigWig parent sRNAseq_siArmi_unique bigDataUrl data-tracks/sRNAseq/siArmi_sRNA_uniq_sense.bw track sRNAseq_siArmi_unique-antisense shortLabel sRNAseq_siArmi_unique-antisense longLabel Armitage knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - average from 3 replicates - antisense type bigWig parent sRNAseq_siArmi_unique bigDataUrl data-tracks/sRNAseq/siArmi_sRNA_uniq_antisense.bw track sRNAseq_siArmi_Rep1_unique container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel sRNAseq_siArmi_Rep1_unique boxedCfg on autoScale on alwaysZero on color 230,159,0 altColor 254,220,143 longLabel Armitage knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 1 type bigWig visibility hide parent sRNAseq windowingFunction mean maxHeightPixels 100:50:8 track sRNAseq_siArmi_Rep1_unique-sense shortLabel sRNAseq_siArmi_Rep1_unique-sense longLabel Armitage knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 1 - sense type bigWig parent sRNAseq_siArmi_Rep1_unique bigDataUrl data-tracks/sRNAseq/siArmi_sRNA_Rep1_uniq_sense.bw track sRNAseq_siArmi_Rep1_unique-antisense shortLabel sRNAseq_siArmi_Rep1_unique-antisense longLabel Armitage knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 1 - antisense type bigWig parent sRNAseq_siArmi_Rep1_unique bigDataUrl data-tracks/sRNAseq/siArmi_sRNA_Rep1_uniq_antisense.bw track sRNAseq_siArmi_Rep2_unique container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel sRNAseq_siArmi_Rep2_unique boxedCfg on autoScale on alwaysZero on color 230,159,0 altColor 254,220,143 longLabel Armitage knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 2 type bigWig visibility hide parent sRNAseq windowingFunction mean maxHeightPixels 100:50:8 track sRNAseq_siArmi_Rep2_unique-sense shortLabel sRNAseq_siArmi_Rep2_unique-sense longLabel Armitage knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 2 - sense type bigWig parent sRNAseq_siArmi_Rep2_unique bigDataUrl data-tracks/sRNAseq/siArmi_sRNA_Rep2_uniq_sense.bw track sRNAseq_siArmi_Rep2_unique-antisense shortLabel sRNAseq_siArmi_Rep2_unique-antisense longLabel Armitage knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 2 - antisense type bigWig parent sRNAseq_siArmi_Rep2_unique bigDataUrl data-tracks/sRNAseq/siArmi_sRNA_Rep2_uniq_antisense.bw track sRNAseq_siArmi_Rep3_unique container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel sRNAseq_siArmi_Rep3_unique boxedCfg on autoScale on alwaysZero on color 230,159,0 altColor 254,220,143 longLabel Armitage knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 3 type bigWig visibility hide parent sRNAseq windowingFunction mean maxHeightPixels 100:50:8 track sRNAseq_siArmi_Rep3_unique-sense shortLabel sRNAseq_siArmi_Rep3_unique-sense longLabel Armitage knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 3 - sense type bigWig parent sRNAseq_siArmi_Rep3_unique bigDataUrl data-tracks/sRNAseq/siArmi_sRNA_Rep3_uniq_sense.bw track sRNAseq_siArmi_Rep3_unique-antisense shortLabel sRNAseq_siArmi_Rep3_unique-antisense longLabel Armitage knock down - genome unique small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 3 - antisense type bigWig parent sRNAseq_siArmi_Rep3_unique bigDataUrl data-tracks/sRNAseq/siArmi_sRNA_Rep3_uniq_antisense.bw track sRNAseq_siLuc_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel sRNAseq_siLuc_all boxedCfg on autoScale on alwaysZero on color 230,159,0 altColor 254,220,143 longLabel Control knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - average from 3 replicates type bigWig visibility full parent sRNAseq windowingFunction mean maxHeightPixels 100:50:8 track sRNAseq_siLuc_all-sense shortLabel sRNAseq_siLuc_all-sense longLabel Control knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - average from 3 replicates - sense type bigWig parent sRNAseq_siLuc_all bigDataUrl data-tracks/sRNAseq/siLuc_sRNA_all_sense.bw track sRNAseq_siLuc_all-antisense shortLabel sRNAseq_siLuc_all-antisense longLabel Control knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - average from 3 replicates - antisense type bigWig parent sRNAseq_siLuc_all bigDataUrl data-tracks/sRNAseq/siLuc_sRNA_all_antisense.bw track sRNAseq_siLuc_Rep1_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel sRNAseq_siLuc_Rep1_all boxedCfg on autoScale on alwaysZero on color 230,159,0 altColor 254,220,143 longLabel Control knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 1 type bigWig visibility hide parent sRNAseq windowingFunction mean maxHeightPixels 100:50:8 track sRNAseq_siLuc_Rep1_all-sense shortLabel sRNAseq_siLuc_Rep1_all-sense longLabel Control knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 1 - sense type bigWig parent sRNAseq_siLuc_Rep1_all bigDataUrl data-tracks/sRNAseq/siLuc_sRNA_Rep1_all_sense.bw track sRNAseq_siLuc_Rep1_all-antisense shortLabel sRNAseq_siLuc_Rep1_all-antisense longLabel Control knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 1 - antisense type bigWig parent sRNAseq_siLuc_Rep1_all bigDataUrl data-tracks/sRNAseq/siLuc_sRNA_Rep1_all_antisense.bw track sRNAseq_siLuc_Rep2_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel sRNAseq_siLuc_Rep2_all boxedCfg on autoScale on alwaysZero on color 230,159,0 altColor 254,220,143 longLabel Control knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 2 type bigWig visibility hide parent sRNAseq windowingFunction mean maxHeightPixels 100:50:8 track sRNAseq_siLuc_Rep2_all-sense shortLabel sRNAseq_siLuc_Rep2_all-sense longLabel Control knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 2 - sense type bigWig parent sRNAseq_siLuc_Rep2_all bigDataUrl data-tracks/sRNAseq/siLuc_sRNA_Rep2_all_sense.bw track sRNAseq_siLuc_Rep2_all-antisense shortLabel sRNAseq_siLuc_Rep2_all-antisense longLabel Control knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 2 - antisense type bigWig parent sRNAseq_siLuc_Rep2_all bigDataUrl data-tracks/sRNAseq/siLuc_sRNA_Rep2_all_antisense.bw track sRNAseq_siLuc_Rep3_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel sRNAseq_siLuc_Rep3_all boxedCfg on autoScale on alwaysZero on color 230,159,0 altColor 254,220,143 longLabel Control knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 3 type bigWig visibility hide parent sRNAseq windowingFunction mean maxHeightPixels 100:50:8 track sRNAseq_siLuc_Rep3_all-sense shortLabel sRNAseq_siLuc_Rep3_all-sense longLabel Control knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 3 - sense type bigWig parent sRNAseq_siLuc_Rep3_all bigDataUrl data-tracks/sRNAseq/siLuc_sRNA_Rep3_all_sense.bw track sRNAseq_siLuc_Rep3_all-antisense shortLabel sRNAseq_siLuc_Rep3_all-antisense longLabel Control knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 3 - antisense type bigWig parent sRNAseq_siLuc_Rep3_all bigDataUrl data-tracks/sRNAseq/siLuc_sRNA_Rep3_all_antisense.bw track sRNAseq_siArmi_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel sRNAseq_siArmi_all boxedCfg on autoScale on alwaysZero on color 230,159,0 altColor 254,220,143 longLabel Armitage knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - average from 3 replicates type bigWig visibility full parent sRNAseq windowingFunction mean maxHeightPixels 100:50:8 track sRNAseq_siArmi_all-sense shortLabel sRNAseq_siArmi_all-sense longLabel Armitage knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - average from 3 replicates - sense type bigWig parent sRNAseq_siArmi_all bigDataUrl data-tracks/sRNAseq/siArmi_sRNA_all_sense.bw track sRNAseq_siArmi_all-antisense shortLabel sRNAseq_siArmi_all-antisense longLabel Armitage knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - average from 3 replicates - antisense type bigWig parent sRNAseq_siArmi_all bigDataUrl data-tracks/sRNAseq/siArmi_sRNA_all_antisense.bw track sRNAseq_siArmi_Rep1_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel sRNAseq_siArmi_Rep1_all boxedCfg on autoScale on alwaysZero on color 230,159,0 altColor 254,220,143 longLabel Armitage knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 1 type bigWig visibility hide parent sRNAseq windowingFunction mean maxHeightPixels 100:50:8 track sRNAseq_siArmi_Rep1_all-sense shortLabel sRNAseq_siArmi_Rep1_all-sense longLabel Armitage knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 1 - sense type bigWig parent sRNAseq_siArmi_Rep1_all bigDataUrl data-tracks/sRNAseq/siArmi_sRNA_Rep1_all_sense.bw track sRNAseq_siArmi_Rep1_all-antisense shortLabel sRNAseq_siArmi_Rep1_all-antisense longLabel Armitage knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 1 - antisense type bigWig parent sRNAseq_siArmi_Rep1_all bigDataUrl data-tracks/sRNAseq/siArmi_sRNA_Rep1_all_antisense.bw track sRNAseq_siArmi_Rep2_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel sRNAseq_siArmi_Rep2_all boxedCfg on autoScale on alwaysZero on color 230,159,0 altColor 254,220,143 longLabel Armitage knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 2 type bigWig visibility hide parent sRNAseq windowingFunction mean maxHeightPixels 100:50:8 track sRNAseq_siArmi_Rep2_all-sense shortLabel sRNAseq_siArmi_Rep2_all-sense longLabel Armitage knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 2 - sense type bigWig parent sRNAseq_siArmi_Rep2_all bigDataUrl data-tracks/sRNAseq/siArmi_sRNA_Rep2_all_sense.bw track sRNAseq_siArmi_Rep2_all-antisense shortLabel sRNAseq_siArmi_Rep2_all-antisense longLabel Armitage knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 2 - antisense type bigWig parent sRNAseq_siArmi_Rep2_all bigDataUrl data-tracks/sRNAseq/siArmi_sRNA_Rep2_all_antisense.bw track sRNAseq_siArmi_Rep3_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel sRNAseq_siArmi_Rep3_all boxedCfg on autoScale on alwaysZero on color 230,159,0 altColor 254,220,143 longLabel Armitage knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 3 type bigWig visibility hide parent sRNAseq windowingFunction mean maxHeightPixels 100:50:8 track sRNAseq_siArmi_Rep3_all-sense shortLabel sRNAseq_siArmi_Rep3_all-sense longLabel Armitage knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 3 - sense type bigWig parent sRNAseq_siArmi_Rep3_all bigDataUrl data-tracks/sRNAseq/siArmi_sRNA_Rep3_all_sense.bw track sRNAseq_siArmi_Rep3_all-antisense shortLabel sRNAseq_siArmi_Rep3_all-antisense longLabel Armitage knock down - all small RNAs sequenced from TraPR isolated Argonaute proteins - Replicate 3 - antisense type bigWig parent sRNAseq_siArmi_Rep3_all bigDataUrl data-tracks/sRNAseq/siArmi_sRNA_Rep3_all_antisense.bw #################################################################################################### #CHIPseq_H3K9me3 track CHIPseq_H3K9me3 superTrack on show boxedCfg on shortLabel CHIPseq_H3K9me3-tracks longLabel CHIPseq_H3K9me3-tracks group Data-tracks track CHIPseq_H3K9me3_siGFP_unique container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_H3K9me3_siGFP_unique boxedCfg on autoScale on alwaysZero on longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_H3K9me3 - genome unique mappers - green=H3K9me3; grey=Input type bigWig visibility full parent CHIPseq_H3K9me3 windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_H3K9me3_IP_siGFP_unique shortLabel CHIPseq_H3K9me3_siGFP_unique longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_H3K9me3 - reads mapping uniquely - H3K9me3-IP type bigWig color 0,158,115 parent CHIPseq_H3K9me3_siGFP_unique bigDataUrl data-tracks/ChIPseq/siGFP_H3K9me3_Sienski-2012_uniq.bw track CHIPseq_H3K9me3_INPUT_siGFP_unique shortLabel CHIPseq_H3K9me3_INPUT_siGFP_unique longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_H3K9me3 - reads mapping uniquely - INPUT type bigWig color 180,180,180 parent CHIPseq_H3K9me3_siGFP_unique bigDataUrl data-tracks/ChIPseq/siGFP_Input_Sienski-2012_uniq.bw track CHIPseq_H3K9me3_siGFP_unique_Rep1 container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_H3K9me3_siGFP_unique_Rep1 boxedCfg on autoScale on alwaysZero on longLabel 4day siGFP knock down - CHIPseq_H3K9me3 - genome unique mappers - Replicate 1 - green=H3K9me3; grey=Input type bigWig visibility hide parent CHIPseq_H3K9me3 windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_H3K9me3_IP_siGFP_unique_Rep1 shortLabel CHIPseq_H3K9me3_siGFP_unique longLabel 4day siGFP knock down - CHIPseq_H3K9me3 - reads mapping uniquely - H3K9me3-IP - Replicate 1 type bigWig color 0,158,115 parent CHIPseq_H3K9me3_siGFP_unique_Rep1 bigDataUrl data-tracks/ChIPseq/siGFP_H3K9me3_Rep1_Sienski-2012_uniq.bw track CHIPseq_H3K9me3_INPUT_siGFP_unique_Rep1 shortLabel CHIPseq_H3K9me3_INPUT_siGFP_unique_Rep1 longLabel 4day siGFP knock down - CHIPseq_H3K9me3 - reads mapping uniquely - INPUT - Replicate 1 type bigWig color 180,180,180 parent CHIPseq_H3K9me3_siGFP_unique_Rep1 bigDataUrl data-tracks/ChIPseq/siGFP_Input_rep1_Sienski-2012_uniq.bw track CHIPseq_H3K9me3_siGFP_unique_Rep2 container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_H3K9me3_siGFP_unique_Rep2 boxedCfg on autoScale on alwaysZero on longLabel 4day siGFP knock down - CHIPseq_H3K9me3 - genome unique mappers - Replicate 2 - green=H3K9me3; grey=Input type bigWig visibility hide parent CHIPseq_H3K9me3 windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_H3K9me3_IP_siGFP_unique_Rep2 shortLabel CHIPseq_H3K9me3_siGFP_unique longLabel 4day siGFP knock down - CHIPseq_H3K9me3 - reads mapping uniquely - H3K9me3-IP - Replicate 2 type bigWig color 0,158,115 parent CHIPseq_H3K9me3_siGFP_unique_Rep2 bigDataUrl data-tracks/ChIPseq/siGFP_H3K9me3_Rep2_Sienski-2012_uniq.bw track CHIPseq_H3K9me3_INPUT_siGFP_unique_Rep2 shortLabel CHIPseq_H3K9me3_INPUT_siGFP_unique_Rep2 longLabel 4day siGFP knock down - CHIPseq_H3K9me3 - reads mapping uniquely - INPUT - Replicate 2 type bigWig color 180,180,180 parent CHIPseq_H3K9me3_siGFP_unique_Rep2 bigDataUrl data-tracks/ChIPseq/siGFP_Input_rep2_Sienski-2012_uniq.bw track CHIPseq_H3K9me3_siGFP_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_H3K9me3_siGFP_all boxedCfg on autoScale on alwaysZero on longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_H3K9me3 - genome all mappers - green=H3K9me3; grey=Input type bigWig visibility full parent CHIPseq_H3K9me3 windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_H3K9me3_IP_siGFP_all shortLabel CHIPseq_H3K9me3_siGFP_all longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_H3K9me3 - reads mapping allly - H3K9me3-IP type bigWig color 0,158,115 parent CHIPseq_H3K9me3_siGFP_all bigDataUrl data-tracks/ChIPseq/siGFP_H3K9me3_Sienski-2012_all.bw track CHIPseq_H3K9me3_INPUT_siGFP_all shortLabel CHIPseq_H3K9me3_INPUT_siGFP_all longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_H3K9me3 - reads mapping allly - INPUT type bigWig color 180,180,180 parent CHIPseq_H3K9me3_siGFP_all bigDataUrl data-tracks/ChIPseq/siGFP_Input_Sienski-2012_all.bw track CHIPseq_H3K9me3_siGFP_all_Rep1 container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_H3K9me3_siGFP_all_Rep1 boxedCfg on autoScale on alwaysZero on longLabel 4day siGFP knock down - CHIPseq_H3K9me3 - genome all mappers - Replicate 1 - green=H3K9me3; grey=Input type bigWig visibility hide parent CHIPseq_H3K9me3 windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_H3K9me3_IP_siGFP_all_Rep1 shortLabel CHIPseq_H3K9me3_siGFP_all longLabel 4day siGFP knock down - CHIPseq_H3K9me3 - reads mapping allly - H3K9me3-IP - Replicate 1 type bigWig color 0,158,115 parent CHIPseq_H3K9me3_siGFP_all_Rep1 bigDataUrl data-tracks/ChIPseq/siGFP_H3K9me3_Rep1_Sienski-2012_all.bw track CHIPseq_H3K9me3_INPUT_siGFP_all_Rep1 shortLabel CHIPseq_H3K9me3_INPUT_siGFP_all_Rep1 longLabel 4day siGFP knock down - CHIPseq_H3K9me3 - reads mapping allly - INPUT - Replicate 1 type bigWig color 180,180,180 parent CHIPseq_H3K9me3_siGFP_all_Rep1 bigDataUrl data-tracks/ChIPseq/siGFP_Input_rep1_Sienski-2012_all.bw track CHIPseq_H3K9me3_siGFP_all_Rep2 container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_H3K9me3_siGFP_all_Rep2 boxedCfg on autoScale on alwaysZero on longLabel 4day siGFP knock down - CHIPseq_H3K9me3 - genome all mappers - Replicate 2 - green=H3K9me3; grey=Input type bigWig visibility hide parent CHIPseq_H3K9me3 windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_H3K9me3_IP_siGFP_all_Rep2 shortLabel CHIPseq_H3K9me3_siGFP_all longLabel 4day siGFP knock down - CHIPseq_H3K9me3 - reads mapping allly - H3K9me3-IP - Replicate 2 type bigWig color 0,158,115 parent CHIPseq_H3K9me3_siGFP_all_Rep2 bigDataUrl data-tracks/ChIPseq/siGFP_H3K9me3_Rep2_Sienski-2012_all.bw track CHIPseq_H3K9me3_INPUT_siGFP_all_Rep2 shortLabel CHIPseq_H3K9me3_INPUT_siGFP_all_Rep2 longLabel 4day siGFP knock down - CHIPseq_H3K9me3 - reads mapping allly - INPUT - Replicate 2 type bigWig color 180,180,180 parent CHIPseq_H3K9me3_siGFP_all_Rep2 bigDataUrl data-tracks/ChIPseq/siGFP_Input_rep2_Sienski-2012_all.bw track CHIPseq_H3K9me3_siPiwi_unique container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_H3K9me3_siPiwi_unique boxedCfg on autoScale on alwaysZero on longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_H3K9me3 - genome unique mappers - green=H3K9me3; grey=Input type bigWig visibility full parent CHIPseq_H3K9me3 windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_H3K9me3_IP_siPiwi_unique shortLabel CHIPseq_H3K9me3_siPiwi_unique longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_H3K9me3 - reads mapping uniquely - H3K9me3-IP type bigWig color 0,158,115 parent CHIPseq_H3K9me3_siPiwi_unique bigDataUrl data-tracks/ChIPseq/siPiwi_H3K9me3_Sienski-2012_uniq.bw track CHIPseq_H3K9me3_INPUT_siPiwi_unique shortLabel CHIPseq_H3K9me3_INPUT_siPiwi_unique longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_H3K9me3 - reads mapping uniquely - INPUT type bigWig color 180,180,180 parent CHIPseq_H3K9me3_siPiwi_unique bigDataUrl data-tracks/ChIPseq/siPiwi_Input_Sienski-2012_uniq.bw track CHIPseq_H3K9me3_siPiwi_unique_Rep1 container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_H3K9me3_siPiwi_unique_Rep1 boxedCfg on autoScale on alwaysZero on longLabel 4day siPiwi knock down - CHIPseq_H3K9me3 - genome unique mappers - Replicate 1 - green=H3K9me3; grey=Input type bigWig visibility hide parent CHIPseq_H3K9me3 windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_H3K9me3_IP_siPiwi_unique_Rep1 shortLabel CHIPseq_H3K9me3_siPiwi_unique longLabel 4day siPiwi knock down - CHIPseq_H3K9me3 - reads mapping uniquely - H3K9me3-IP - Replicate 1 type bigWig color 0,158,115 parent CHIPseq_H3K9me3_siPiwi_unique_Rep1 bigDataUrl data-tracks/ChIPseq/siPiwi_H3K9me3_Rep1_Sienski-2012_uniq.bw track CHIPseq_H3K9me3_INPUT_siPiwi_unique_Rep1 shortLabel CHIPseq_H3K9me3_INPUT_siPiwi_unique_Rep1 longLabel 4day siPiwi knock down - CHIPseq_H3K9me3 - reads mapping uniquely - INPUT - Replicate 1 type bigWig color 180,180,180 parent CHIPseq_H3K9me3_siPiwi_unique_Rep1 bigDataUrl data-tracks/ChIPseq/siPiwi_Input_rep1_Sienski-2012_uniq.bw track CHIPseq_H3K9me3_siPiwi_unique_Rep2 container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_H3K9me3_siPiwi_unique_Rep2 boxedCfg on autoScale on alwaysZero on longLabel 4day siPiwi knock down - CHIPseq_H3K9me3 - genome unique mappers - Replicate 2 - green=H3K9me3; grey=Input type bigWig visibility hide parent CHIPseq_H3K9me3 windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_H3K9me3_IP_siPiwi_unique_Rep2 shortLabel CHIPseq_H3K9me3_siPiwi_unique longLabel 4day siPiwi knock down - CHIPseq_H3K9me3 - reads mapping uniquely - H3K9me3-IP - Replicate 2 type bigWig color 0,158,115 parent CHIPseq_H3K9me3_siPiwi_unique_Rep2 bigDataUrl data-tracks/ChIPseq/siPiwi_H3K9me3_Rep2_Sienski-2012_uniq.bw track CHIPseq_H3K9me3_INPUT_siPiwi_unique_Rep2 shortLabel CHIPseq_H3K9me3_INPUT_siPiwi_unique_Rep2 longLabel 4day siPiwi knock down - CHIPseq_H3K9me3 - reads mapping uniquely - INPUT - Replicate 2 type bigWig color 180,180,180 parent CHIPseq_H3K9me3_siPiwi_unique_Rep2 bigDataUrl data-tracks/ChIPseq/siPiwi_Input_rep2_Sienski-2012_uniq.bw track CHIPseq_H3K9me3_siPiwi_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_H3K9me3_siPiwi_all boxedCfg on autoScale on alwaysZero on longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_H3K9me3 - genome all mappers - green=H3K9me3; grey=Input type bigWig visibility full parent CHIPseq_H3K9me3 windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_H3K9me3_IP_siPiwi_all shortLabel CHIPseq_H3K9me3_siPiwi_all longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_H3K9me3 - reads mapping allly - H3K9me3-IP type bigWig color 0,158,115 parent CHIPseq_H3K9me3_siPiwi_all bigDataUrl data-tracks/ChIPseq/siPiwi_H3K9me3_Sienski-2012_all.bw track CHIPseq_H3K9me3_INPUT_siPiwi_all shortLabel CHIPseq_H3K9me3_INPUT_siPiwi_all longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_H3K9me3 - reads mapping allly - INPUT type bigWig color 180,180,180 parent CHIPseq_H3K9me3_siPiwi_all bigDataUrl data-tracks/ChIPseq/siPiwi_Input_Sienski-2012_all.bw track CHIPseq_H3K9me3_siPiwi_all_Rep1 container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_H3K9me3_siPiwi_all_Rep1 boxedCfg on autoScale on alwaysZero on longLabel 4day siPiwi knock down - CHIPseq_H3K9me3 - genome all mappers - Replicate 1 - green=H3K9me3; grey=Input type bigWig visibility hide parent CHIPseq_H3K9me3 windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_H3K9me3_IP_siPiwi_all_Rep1 shortLabel CHIPseq_H3K9me3_siPiwi_all longLabel 4day siPiwi knock down - CHIPseq_H3K9me3 - reads mapping allly - H3K9me3-IP - Replicate 1 type bigWig color 0,158,115 parent CHIPseq_H3K9me3_siPiwi_all_Rep1 bigDataUrl data-tracks/ChIPseq/siPiwi_H3K9me3_Rep1_Sienski-2012_all.bw track CHIPseq_H3K9me3_INPUT_siPiwi_all_Rep1 shortLabel CHIPseq_H3K9me3_INPUT_siPiwi_all_Rep1 longLabel 4day siPiwi knock down - CHIPseq_H3K9me3 - reads mapping allly - INPUT - Replicate 1 type bigWig color 180,180,180 parent CHIPseq_H3K9me3_siPiwi_all_Rep1 bigDataUrl data-tracks/ChIPseq/siPiwi_Input_rep1_Sienski-2012_all.bw track CHIPseq_H3K9me3_siPiwi_all_Rep2 container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_H3K9me3_siPiwi_all_Rep2 boxedCfg on autoScale on alwaysZero on longLabel 4day siPiwi knock down - CHIPseq_H3K9me3 - genome all mappers - Replicate 2 - green=H3K9me3; grey=Input type bigWig visibility hide parent CHIPseq_H3K9me3 windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_H3K9me3_IP_siPiwi_all_Rep2 shortLabel CHIPseq_H3K9me3_siPiwi_all longLabel 4day siPiwi knock down - CHIPseq_H3K9me3 - reads mapping allly - H3K9me3-IP - Replicate 2 type bigWig color 0,158,115 parent CHIPseq_H3K9me3_siPiwi_all_Rep2 bigDataUrl data-tracks/ChIPseq/siPiwi_H3K9me3_Rep2_Sienski-2012_all.bw track CHIPseq_H3K9me3_INPUT_siPiwi_all_Rep2 shortLabel CHIPseq_H3K9me3_INPUT_siPiwi_all_Rep2 longLabel 4day siPiwi knock down - CHIPseq_H3K9me3 - reads mapping allly - INPUT - Replicate 2 type bigWig color 180,180,180 parent CHIPseq_H3K9me3_siPiwi_all_Rep2 bigDataUrl data-tracks/ChIPseq/siPiwi_Input_rep2_Sienski-2012_all.bw #################################################################################################### #CHIPseq_PolII track CHIPseq_PolII superTrack on show boxedCfg on shortLabel CHIPseq_PolII-tracks longLabel CHIPseq_PolII-tracks group Data-tracks track CHIPseq_PolII_siGFP_unique container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_PolII_siGFP_unique boxedCfg on autoScale on alwaysZero on longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - genome unique mappers - green=PolII; grey=Input type bigWig visibility full parent CHIPseq_PolII windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_PolII_IP_siGFP_unique shortLabel CHIPseq_PolII_siGFP_unique longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping uniquely - PolII-IP type bigWig color 88,214,167 parent CHIPseq_PolII_siGFP_unique bigDataUrl data-tracks/ChIPseq/siGFP_Rpb3_Sienski-2012_uniq.bw track CHIPseq_PolII_INPUT_siControl_unique shortLabel CHIPseq_PolII_INPUT_siControl_unique longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping uniquely - INPUT type bigWig color 180,180,180 parent CHIPseq_PolII_siGFP_unique bigDataUrl data-tracks/ChIPseq/siGFP_Input_Sienski-2012_uniq.bw track CHIPseq_PolII_siGFP_unique_Rep1 container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_PolII_siGFP_unique_Rep1 boxedCfg on autoScale on alwaysZero on longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - genome unique mappers - Replicate 1 - green=PolII; grey=Input type bigWig visibility hide parent CHIPseq_PolII windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_PolII_IP_siGFP_unique_Rep1 shortLabel CHIPseq_PolII_siGFP_unique longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping uniquely - PolII-IP - Replicate 1 type bigWig color 88,214,167 parent CHIPseq_PolII_siGFP_unique_Rep1 bigDataUrl data-tracks/ChIPseq/siGFP_Rpb3_Rep1_Sienski-2012_uniq.bw track CHIPseq_PolII_INPUT_siControl_unique_Rep1 shortLabel CHIPseq_PolII_INPUT_siControl_unique_Rep1 longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping uniquely - INPUT - Replicate 1 type bigWig color 180,180,180 parent CHIPseq_PolII_siGFP_unique_Rep1 bigDataUrl data-tracks/ChIPseq/siGFP_Input_rep1_Sienski-2012_uniq.bw track CHIPseq_PolII_siGFP_unique_Rep2 container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_PolII_siGFP_unique_Rep2 boxedCfg on autoScale on alwaysZero on longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - genome unique mappers - Replicate 2 - green=PolII; grey=Input type bigWig visibility hide parent CHIPseq_PolII windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_PolII_IP_siGFP_unique_Rep2 shortLabel CHIPseq_PolII_siGFP_unique longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping uniquely - PolII-IP - Replicate 2 type bigWig color 88,214,167 parent CHIPseq_PolII_siGFP_unique_Rep2 bigDataUrl data-tracks/ChIPseq/siGFP_Rpb3_Rep2_Sienski-2012_uniq.bw track CHIPseq_PolII_INPUT_siControl_unique_Rep2 shortLabel CHIPseq_PolII_INPUT_siControl_unique_Rep2 longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping uniquely - INPUT - Replicate 2 type bigWig color 180,180,180 parent CHIPseq_PolII_siGFP_unique_Rep2 bigDataUrl data-tracks/ChIPseq/siGFP_Input_rep2_Sienski-2012_uniq.bw track CHIPseq_PolII_siGFP_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_PolII_siGFP_all boxedCfg on autoScale on alwaysZero on longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - genome all mappers - green=PolII; grey=Input type bigWig visibility full parent CHIPseq_PolII windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_PolII_IP_siGFP_all shortLabel CHIPseq_PolII_siGFP_all longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping allly - PolII-IP type bigWig color 88,214,167 parent CHIPseq_PolII_siGFP_all bigDataUrl data-tracks/ChIPseq/siGFP_Rpb3_Sienski-2012_all.bw track CHIPseq_PolII_INPUT_siControl_all shortLabel CHIPseq_PolII_INPUT_siControl_all longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping allly - INPUT type bigWig color 180,180,180 parent CHIPseq_PolII_siGFP_all bigDataUrl data-tracks/ChIPseq/siGFP_Input_Sienski-2012_all.bw track CHIPseq_PolII_siGFP_all_Rep1 container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_PolII_siGFP_all_Rep1 boxedCfg on autoScale on alwaysZero on longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - genome all mappers - Replicate 1 - green=PolII; grey=Input type bigWig visibility hide parent CHIPseq_PolII windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_PolII_IP_siGFP_all_Rep1 shortLabel CHIPseq_PolII_siGFP_all longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping allly - PolII-IP - Replicate 1 type bigWig color 88,214,167 parent CHIPseq_PolII_siGFP_all_Rep1 bigDataUrl data-tracks/ChIPseq/siGFP_Rpb3_Rep1_Sienski-2012_all.bw track CHIPseq_PolII_INPUT_siControl_all_Rep1 shortLabel CHIPseq_PolII_INPUT_siControl_all_Rep1 longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping allly - INPUT - Replicate 1 type bigWig color 180,180,180 parent CHIPseq_PolII_siGFP_all_Rep1 bigDataUrl data-tracks/ChIPseq/siGFP_Input_rep1_Sienski-2012_all.bw track CHIPseq_PolII_siGFP_all_Rep2 container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_PolII_siGFP_all_Rep2 boxedCfg on autoScale on alwaysZero on longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - genome all mappers - Replicate 2 - green=PolII; grey=Input type bigWig visibility hide parent CHIPseq_PolII windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_PolII_IP_siGFP_all_Rep2 shortLabel CHIPseq_PolII_siGFP_all longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping allly - PolII-IP - Replicate 2 type bigWig color 88,214,167 parent CHIPseq_PolII_siGFP_all_Rep2 bigDataUrl data-tracks/ChIPseq/siGFP_Rpb3_Rep2_Sienski-2012_all.bw track CHIPseq_PolII_INPUT_siControl_all_Rep2 shortLabel CHIPseq_PolII_INPUT_siControl_all_Rep2 longLabel 4day siGFP knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping allly - INPUT - Replicate 2 type bigWig color 180,180,180 parent CHIPseq_PolII_siGFP_all_Rep2 bigDataUrl data-tracks/ChIPseq/siGFP_Input_rep2_Sienski-2012_all.bw track CHIPseq_PolII_siPiwi_unique container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_PolII_siPiwi_unique boxedCfg on autoScale on alwaysZero on longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - genome unique mappers - green=PolII; grey=Input type bigWig visibility full parent CHIPseq_PolII windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_PolII_IP_siPiwi_unique shortLabel CHIPseq_PolII_siPiwi_unique longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping uniquely - PolII-IP type bigWig color 88,214,167 parent CHIPseq_PolII_siPiwi_unique bigDataUrl data-tracks/ChIPseq/siPiwi_Rpb3_Sienski-2012_uniq.bw track CHIPseq_PolII_INPUT_siPiwi_unique shortLabel CHIPseq_PolII_INPUT_siPiwi_unique longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping uniquely - INPUT type bigWig color 180,180,180 parent CHIPseq_PolII_siPiwi_unique bigDataUrl data-tracks/ChIPseq/siPiwi_Input_Sienski-2012_uniq.bw track CHIPseq_PolII_siPiwi_unique_Rep1 container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_PolII_siPiwi_unique_Rep1 boxedCfg on autoScale on alwaysZero on longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - genome unique mappers - Replicate 1 - green=PolII; grey=Input type bigWig visibility hide parent CHIPseq_PolII windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_PolII_IP_siPiwi_unique_Rep1 shortLabel CHIPseq_PolII_siPiwi_unique longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping uniquely - PolII-IP - Replicate 1 type bigWig color 88,214,167 parent CHIPseq_PolII_siPiwi_unique_Rep1 bigDataUrl data-tracks/ChIPseq/siPiwi_Rpb3_Rep1_Sienski-2012_uniq.bw track CHIPseq_PolII_INPUT_siPiwi_unique_Rep1 shortLabel CHIPseq_PolII_INPUT_siPiwi_unique_Rep1 longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping uniquely - INPUT - Replicate 1 type bigWig color 180,180,180 parent CHIPseq_PolII_siPiwi_unique_Rep1 bigDataUrl data-tracks/ChIPseq/siPiwi_Input_rep1_Sienski-2012_uniq.bw track CHIPseq_PolII_siPiwi_unique_Rep2 container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_PolII_siPiwi_unique_Rep2 boxedCfg on autoScale on alwaysZero on longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - genome unique mappers - Replicate 2 - green=PolII; grey=Input type bigWig visibility hide parent CHIPseq_PolII windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_PolII_IP_siPiwi_unique_Rep2 shortLabel CHIPseq_PolII_siPiwi_unique longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping uniquely - PolII-IP - Replicate 2 type bigWig color 88,214,167 parent CHIPseq_PolII_siPiwi_unique_Rep2 bigDataUrl data-tracks/ChIPseq/siPiwi_Rpb3_Rep2_Sienski-2012_uniq.bw track CHIPseq_PolII_INPUT_siPiwi_unique_Rep2 shortLabel CHIPseq_PolII_INPUT_siPiwi_unique_Rep2 longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping uniquely - INPUT - Replicate 2 type bigWig color 180,180,180 parent CHIPseq_PolII_siPiwi_unique_Rep2 bigDataUrl data-tracks/ChIPseq/siPiwi_Input_rep2_Sienski-2012_uniq.bw track CHIPseq_PolII_siPiwi_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_PolII_siPiwi_all boxedCfg on autoScale on alwaysZero on longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - genome all mappers - green=PolII; grey=Input type bigWig visibility full parent CHIPseq_PolII windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_PolII_IP_siPiwi_all shortLabel CHIPseq_PolII_siPiwi_all longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping allly - PolII-IP type bigWig color 88,214,167 parent CHIPseq_PolII_siPiwi_all bigDataUrl data-tracks/ChIPseq/siPiwi_Rpb3_Sienski-2012_all.bw track CHIPseq_PolII_INPUT_siPiwi_all shortLabel CHIPseq_PolII_INPUT_siPiwi_all longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping allly - INPUT type bigWig color 180,180,180 parent CHIPseq_PolII_siPiwi_all bigDataUrl data-tracks/ChIPseq/siPiwi_Input_Sienski-2012_all.bw track CHIPseq_PolII_siPiwi_all_Rep1 container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_PolII_siPiwi_all_Rep1 boxedCfg on autoScale on alwaysZero on longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - genome all mappers - Replicate 1 - green=PolII; grey=Input type bigWig visibility hide parent CHIPseq_PolII windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_PolII_IP_siPiwi_all_Rep1 shortLabel CHIPseq_PolII_siPiwi_all longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping allly - PolII-IP - Replicate 1 type bigWig color 88,214,167 parent CHIPseq_PolII_siPiwi_all_Rep1 bigDataUrl data-tracks/ChIPseq/siPiwi_Rpb3_Rep1_Sienski-2012_all.bw track CHIPseq_PolII_INPUT_siPiwi_all_Rep1 shortLabel CHIPseq_PolII_INPUT_siPiwi_all_Rep1 longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping allly - INPUT - Replicate 1 type bigWig color 180,180,180 parent CHIPseq_PolII_siPiwi_all_Rep1 bigDataUrl data-tracks/ChIPseq/siPiwi_Input_rep1_Sienski-2012_all.bw track CHIPseq_PolII_siPiwi_all_Rep2 container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel CHIPseq_PolII_siPiwi_all_Rep2 boxedCfg on autoScale on alwaysZero on longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - genome all mappers - Replicate 2 - green=PolII; grey=Input type bigWig visibility hide parent CHIPseq_PolII windowingFunction mean maxHeightPixels 100:50:8 track CHIPseq_PolII_IP_siPiwi_all_Rep2 shortLabel CHIPseq_PolII_siPiwi_all longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping allly - PolII-IP - Replicate 2 type bigWig color 88,214,167 parent CHIPseq_PolII_siPiwi_all_Rep2 bigDataUrl data-tracks/ChIPseq/siPiwi_Rpb3_Rep2_Sienski-2012_all.bw track CHIPseq_PolII_INPUT_siPiwi_all_Rep2 shortLabel CHIPseq_PolII_INPUT_siPiwi_all_Rep2 longLabel 4day siPiwi knock down - average from 2 replicates - CHIPseq_PolII via Rpb3 - reads mapping allly - INPUT - Replicate 2 type bigWig color 180,180,180 parent CHIPseq_PolII_siPiwi_all_Rep2 bigDataUrl data-tracks/ChIPseq/siPiwi_Input_rep2_Sienski-2012_all.bw #################################################################################################### #PROseq_Dominik track PROseq superTrack on show boxedCfg on shortLabel PROseq-tracks longLabel PROseq-tracks group Data-tracks track PROseq_Dominik_nuclei_uniq container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel PROseq_nuclei_uniq boxedCfg on autoScale on alwaysZero on longLabel PROseq libraries by Dominik - isolated nuclei - reads mapping uniquely to the genome type bigWig color 159,121,192 visibility full parent PROseq windowingFunction mean maxHeightPixels 100:50:8 track PROseq_Dominik_nuclei_uniq-sense shortLabel PROseq_Dominik_nuclei_uniq-sense longLabel PROseq libraries by Dominik - isolated nuclei - reads mapping uniquely to the genome - sense type bigWig color 159,121,192 parent PROseq_Dominik_nuclei_uniq bigDataUrl data-tracks/PROseq_Dominik/PROseq-nuclei-merged_uniq_sense.bw track PROseq_Dominik_nuclei_uniq-antisense shortLabel PROseq_Dominik_nuclei_uniq-antisense longLabel PROseq libraries by Dominik - isolated nuclei - reads mapping uniquely to the genome - antisense type bigWig color 159,121,192 parent PROseq_Dominik_nuclei_uniq bigDataUrl data-tracks/PROseq_Dominik/PROseq-nuclei-merged_uniq_antisense.bw track PROseq_Dominik_permeabilized_uniq container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel PROseq_permeabilized_uniq boxedCfg on autoScale on alwaysZero on longLabel PROseq libraries by Dominik - isolated permeabilized - reads mapping uniquely to the genome type bigWig color 159,121,192 visibility full parent PROseq windowingFunction mean maxHeightPixels 100:50:8 track PROseq_Dominik_permeabilized_uniq-sense shortLabel PROseq_Dominik_permeabilized_uniq-sense longLabel PROseq libraries by Dominik - isolated permeabilized - reads mapping uniquely to the genome - sense type bigWig color 159,121,192 parent PROseq_Dominik_permeabilized_uniq bigDataUrl data-tracks/PROseq_Dominik/PROseq-permeabilized-merged_uniq_sense.bw track PROseq_Dominik_permeabilized_uniq-antisense shortLabel PROseq_Dominik_permeabilized_uniq-antisense longLabel PROseq libraries by Dominik - isolated permeabilized - reads mapping uniquely to the genome - antisense type bigWig color 159,121,192 parent PROseq_Dominik_permeabilized_uniq bigDataUrl data-tracks/PROseq_Dominik/PROseq-permeabilized-merged_uniq_antisense.bw track PROseq_Dominik_all_uniq container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel PROseq_all_uniq boxedCfg on autoScale on alwaysZero on longLabel PROseq libraries by Dominik - isolated all - reads mapping uniquely to the genome type bigWig color 159,121,192 visibility full parent PROseq windowingFunction mean maxHeightPixels 100:50:8 track PROseq_Dominik_all_uniq-sense shortLabel PROseq_Dominik_all_uniq-sense longLabel PROseq libraries by Dominik - isolated all - reads mapping uniquely to the genome - sense type bigWig color 159,121,192 parent PROseq_Dominik_all_uniq bigDataUrl data-tracks/PROseq_Dominik/PROseq-all-merged_uniq_sense.bw track PROseq_Dominik_all_uniq-antisense shortLabel PROseq_Dominik_all_uniq-antisense longLabel PROseq libraries by Dominik - isolated all - reads mapping uniquely to the genome - antisense type bigWig color 159,121,192 parent PROseq_Dominik_all_uniq bigDataUrl data-tracks/PROseq_Dominik/PROseq-all-merged_uniq_antisense.bw track PROseq_Dominik_nuclei_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel PROseq_nuclei_all boxedCfg on autoScale on alwaysZero on longLabel PROseq libraries by Dominik - isolated nuclei - all reads mapping to the genome type bigWig color 159,121,192 visibility full parent PROseq windowingFunction mean maxHeightPixels 100:50:8 track PROseq_Dominik_nuclei_all-sense shortLabel PROseq_Dominik_nuclei_all-sense longLabel PROseq libraries by Dominik - isolated nuclei - all reads mapping to the genome - sense type bigWig color 159,121,192 parent PROseq_Dominik_nuclei_all bigDataUrl data-tracks/PROseq_Dominik/PROseq-nuclei-merged_all_sense.bw track PROseq_Dominik_nuclei_all-antisense shortLabel PROseq_Dominik_nuclei_all-antisense longLabel PROseq libraries by Dominik - isolated nuclei - all reads mapping to the genomee - antisense type bigWig color 159,121,192 parent PROseq_Dominik_nuclei_all bigDataUrl data-tracks/PROseq_Dominik/PROseq-nuclei-merged_all_antisense.bw track PROseq_Dominik_permeabilized_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel PROseq_permeabilized_all boxedCfg on autoScale on alwaysZero on longLabel PROseq libraries by Dominik - isolated permeabilized - all reads mapping to the genome type bigWig color 159,121,192 visibility full parent PROseq windowingFunction mean maxHeightPixels 100:50:8 track PROseq_Dominik_permeabilized_all-sense shortLabel PROseq_Dominik_permeabilized_all-sense longLabel PROseq libraries by Dominik - isolated permeabilized - all reads mapping to the genome - sense type bigWig color 159,121,192 parent PROseq_Dominik_permeabilized_all bigDataUrl data-tracks/PROseq_Dominik/PROseq-permeabilized-merged_all_sense.bw track PROseq_Dominik_permeabilized_all-antisense shortLabel PROseq_Dominik_permeabilized_all-antisense longLabel PROseq libraries by Dominik - isolated permeabilized - all reads mapping to the genome - antisense type bigWig color 159,121,192 parent PROseq_Dominik_permeabilized_all bigDataUrl data-tracks/PROseq_Dominik/PROseq-permeabilized-merged_all_antisense.bw track PROseq_Dominik_all_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel PROseq_all_all boxedCfg on autoScale on alwaysZero on longLabel PROseq libraries by Dominik - isolated all - reads mapping alluely to the genome type bigWig color 159,121,192 visibility full parent PROseq windowingFunction mean maxHeightPixels 100:50:8 track PROseq_Dominik_all_all-sense shortLabel PROseq_Dominik_all_all-sense longLabel PROseq libraries by Dominik - isolated all - all reads mapping to the genome - sense type bigWig color 159,121,192 parent PROseq_Dominik_all_all bigDataUrl data-tracks/PROseq_Dominik/PROseq-all-merged_all_sense.bw track PROseq_Dominik_all_all-antisense shortLabel PROseq_Dominik_all_all-antisense longLabel PROseq libraries by Dominik - isolated all - all reads mapping to the genome - antisense type bigWig color 159,121,192 parent PROseq_Dominik_all_all bigDataUrl data-tracks/PROseq_Dominik/PROseq-all-merged_all_antisense.bw #################################################################################################### #STARRseq track STARRseq superTrack on show boxedCfg on shortLabel STARRseq longLabel STARRseq data from Arnold et.al. 2013 group Data-tracks track STARRseq_OSC_uniq container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel STARRseq_unique boxedCfg on autoScale on alwaysZero on longLabel STARRseq data from Arnold et.al. 2013 - genome-uniquely mapping reads - green=STARRseq; grey=Input-library type bigWig parent STARRseq windowingFunction mean visibility full maxHeightPixels 100:50:8 track STARRseq_OSC_exp_uniq shortLabel STARRseq_OSC_exp longLabel STARRseq type bigWig color 240,228,66 parent STARRseq_OSC_uniq bigDataUrl data-tracks/STARRseq/OSC_STARRseq.uniq.bw track STARRseq_OSC_input_uniq shortLabel STARRseq_OSC_input longLabel STARRseq type bigWig color 180,180,180 parent STARRseq_OSC_uniq bigDataUrl data-tracks/STARRseq/OSC_STARRseq_INPUT.uniq.bw track STARRseq_OSC_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel STARRseq_all boxedCfg on autoScale on alwaysZero on longLabel STARRseq data from Arnold et.al. 2013 - all mapping reads - yellow=STARRseq; grey=Input-library type bigWig parent STARRseq windowingFunction mean visibility full maxHeightPixels 100:50:8 track STARRseq_OSC_exp_all shortLabel STARRseq_OSC_exp longLabel STARRseq type bigWig color 240,228,66 parent STARRseq_OSC_all bigDataUrl data-tracks/STARRseq/OSC_STARRseq.all.bw track STARRseq_OSC_input_all shortLabel STARRseq_OSC_input longLabel STARRseq type bigWig color 180,180,180 parent STARRseq_OSC_all bigDataUrl data-tracks/STARRseq/OSC_STARRseq_INPUT.all.bw #################################################################################################### #dCP STARRseq track dCP_STARRseq_OSC_uniq container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel dCP_STARRseq_unique boxedCfg on autoScale on alwaysZero on longLabel STARRseq data using a developmental core-promoter from Zabidi et.al. 2015 - genome-uniquely mapping reads - yellow=dCP_STARRseq; grey=Input-library type bigWig parent STARRseq windowingFunction mean visibility full maxHeightPixels 100:50:8 track dCP_STARRseq_OSC_exp_uniq shortLabel dCP_STARRseq_OSC_exp longLabel dCP_STARRseq type bigWig color 240,228,66 parent dCP_STARRseq_OSC_uniq bigDataUrl data-tracks/STARRseq/dCP_OSC_STARRseq_uniq.bw track dCP_STARRseq_OSC_input_uniq shortLabel dCP_STARRseq_OSC_input longLabel dCP_STARRseq type bigWig color 180,180,180 parent dCP_STARRseq_OSC_uniq bigDataUrl data-tracks/STARRseq/dCP_OSC_STARRseq_input_uniq.bw track dCP_STARRseq_OSC_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel dCP_STARRseq_all boxedCfg on autoScale on alwaysZero on longLabel STARRseq data using a developmental core-promoter from Zabidi et.al. 2015 - all mapping reads - yellow=dCP_STARRseq; grey=Input-library type bigWig parent STARRseq windowingFunction mean visibility full maxHeightPixels 100:50:8 track dCP_STARRseq_OSC_exp_all shortLabel dCP_STARRseq_OSC_exp longLabel dCP_STARRseq type bigWig color 240,228,66 parent dCP_STARRseq_OSC_all bigDataUrl data-tracks/STARRseq/dCP_OSC_STARRseq_all.bw track dCP_STARRseq_OSC_input_all shortLabel dCP_STARRseq_OSC_input longLabel dCP_STARRseq type bigWig color 180,180,180 parent dCP_STARRseq_OSC_all bigDataUrl data-tracks/STARRseq/dCP_OSC_STARRseq_input_all.bw #################################################################################################### #hkCP STARRseq track hkCP_STARRseq_OSC_uniq container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel hkCP_STARRseq_unique boxedCfg on autoScale on alwaysZero on longLabel STARRseq data using a house-keeping core-promoter from Zabidi et.al. 2015 - genome-uniquely mapping reads - yellow=hkCP_STARRseq; grey=Input-library type bigWig parent STARRseq windowingFunction mean visibility full maxHeightPixels 100:50:8 track hkCP_STARRseq_OSC_exp_uniq shortLabel hkCP_STARRseq_OSC_exp longLabel hkCP_STARRseq type bigWig color 240,228,66 parent hkCP_STARRseq_OSC_uniq bigDataUrl data-tracks/STARRseq/hkCP_OSC_STARRseq_uniq.bw track hkCP_STARRseq_OSC_input_uniq shortLabel hkCP_STARRseq_OSC_input longLabel hkCP_STARRseq type bigWig color 180,180,180 parent hkCP_STARRseq_OSC_uniq bigDataUrl data-tracks/STARRseq/hkCP_S2_STARRseq_input_uniq.bw track hkCP_STARRseq_OSC_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel hkCP_STARRseq_all boxedCfg on autoScale on alwaysZero on longLabel STARRseq data using a house-keeping core-promoter from Zabidi et.al. 2015 - all mapping reads - yellow=hkCP_STARRseq; grey=Input-library type bigWig parent STARRseq windowingFunction mean visibility full maxHeightPixels 100:50:8 track hkCP_STARRseq_OSC_exp_all shortLabel hkCP_STARRseq_OSC_exp longLabel hkCP_STARRseq type bigWig color 240,228,66 parent hkCP_STARRseq_OSC_all bigDataUrl data-tracks/STARRseq/hkCP_OSC_STARRseq_all.bw track hkCP_STARRseq_OSC_input_all shortLabel hkCP_STARRseq_OSC_input longLabel hkCP_STARRseq type bigWig color 180,180,180 parent hkCP_STARRseq_OSC_all bigDataUrl data-tracks/STARRseq/hkCP_S2_STARRseq_input_all.bw #################################################################################################### #ONT direct RNAseq 3' ends track ONT_directRNA_3ends container multiWig showSubtrackColorOnUi on shortLabel 3'ends_ONT_RNAseq boxedCfg on autoScale on alwaysZero on longLabel 3' ends of ONT direct RNAseq reads type bigWig aggregate solidOverlay visibility full parent OSC_specific_3ends maxHeightPixels 100:50:8 track ONT_directRNA_3ends_sense shortLabel 3'ends_ONT_RNAseq - sense longLabel 3' ends of ONT direct RNAseq reads - sense visibility full alwaysZero on type bigWig color 0,114,178 group Annotations parent ONT_directRNA_3ends bigDataUrl annotations/ONT/ONT.3end.sense.bw track ONT_directRNA_3ends_antisense shortLabel 3'ends_ONT_RNAseq - antisense longLabel 3' ends of ONT direct RNAseq reads - antisense visibility full alwaysZero on type bigWig color 213,94,0 altColor 213,94,0 group Annotations parent ONT_directRNA_3ends bigDataUrl annotations/ONT/ONT.3end.antisense.bw #################################################################################################### #DHSseq track DHSseq superTrack on show boxedCfg on shortLabel DHSseq longLabel DHS (DNAse hypersensitivity sequencing) data from Arnold et.al. 2013 group Data-tracks track DHS_OSC_uniq container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel DHSseq_unique boxedCfg on autoScale on alwaysZero on longLabel DHS (DNAse hypersensitivity sequencing) data from Arnold et.al. 2013 - genome-uniquely mapping reads - green=DHSseq; grey=Input-library type bigWig parent DHSseq windowingFunction mean visibility full maxHeightPixels 100:50:8 track DHS_OSC_exp_uniq shortLabel DHSseq_uniq_exp longLabel DHSseq_uniq type bigWig color 240,228,66 parent DHS_OSC_uniq bigDataUrl data-tracks/DHSseq/OSC_DHSseq_uniq.bw track DHS_OSC_input_uniq shortLabel DHSseq_uniq_input longLabel Input for DHSseq unique type bigWig color 180,180,180 parent DHS_OSC_uniq bigDataUrl data-tracks/DHSseq/OSC_DHSseq_INPUT_uniq.bw track DHS_OSC_all container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel DHSseq_all boxedCfg on autoScale on alwaysZero on longLabel DHS (DNAse hypersensitivity sequencing) data from Arnold et.al. 2013 - genome-all mapping reads - green=DHSseq; grey=Input-library type bigWig parent DHSseq windowingFunction mean visibility full maxHeightPixels 100:50:8 track DHS_OSC_exp_all shortLabel DHSseq_all_exp longLabel DHSseq_all type bigWig color 240,228,66 parent DHS_OSC_all bigDataUrl data-tracks/DHSseq/OSC_DHSseq_all.bw track DHS_OSC_input_all shortLabel DHSseq_all_input longLabel Input for DHSseq all type bigWig color 180,180,180 parent DHS_OSC_all bigDataUrl data-tracks/DHSseq/OSC_DHSseq_INPUT_all.bw #################################################################################################### #RNAseq - RZ + splice-junction tracks track RNAseq_rRNA_depleted_unique container multiWig aggregate transparentOverlay group Data-tracks showSubtrackColorOnUi on shortLabel RNAseq_rRNA_depleted boxedCfg on autoScale on alwaysZero on longLabel wtOSC - rRNA depleted RNAseq - genome unique mappers type bigWig visibility full parent RNAseq windowingFunction mean maxHeightPixels 100:50:8 track RNAseq_rRNA_depleted_unique-sense shortLabel RNAseq_rRNA_depleted_unique-sense longLabel wtOSC - rRNA depleted RNAseq - genome unique mappers - reads mapping uniquely to the top strand of the genome type bigWig parent RNAseq_rRNA_depleted_unique bigDataUrl data-tracks/RNAseq/unique_mappers.sense_unpaired.bw track RNAseq_rRNA_depleted-antisense shortLabel RNAseq_rRNA_depleted_unique-antisense longLabel wtOSC - rRNA depleted RNAseq - genome unique mappers - reads mapping uniquely to the bottom strand of the genome type bigWig parent RNAseq_rRNA_depleted_unique bigDataUrl data-tracks/RNAseq/unique_mappers.antisense_unpaired.bw track splice_junctions_unpaired shortLabel splice-junctions longLabel splice-junctions called from rRNA depleted RNAseq data - score is fraction of reads that splice type bigInteract interactUp true useScore on group RNAseq visibility full compositeTrack on track splice_junctions_unpaired.antisense shortLabel splice-junctions_sense type bigInteract maxHeightPixels 100:50:8 interactUp true useScore on parent splice_junctions_unpaired visibility full bigDataUrl data-tracks/RNAseq/splice_junctions_unpaired.sense.interact track splice_junctions_unpaired.sense shortLabel splice-junctions_antisense type bigInteract maxHeightPixels 50:50:8 interactUp false useScore on parent splice_junctions_unpaired visibility full bigDataUrl data-tracks/RNAseq/splice_junctions_unpaired.antisense.interact track analyzable_regions-splicing compositeTrack on shortLabel analyzable_regions-splicing longLabel regions with sufficient coverage to evaluate splice-junctions group RNAseq priority 3 visibility hide type bed allButtonPair on track analyzable_regions-splicing_sense type bigBed shortLabel analyzable_regions-splicing_sense longLabel regions with sufficient coverage to evaluate splice-junctions - sense maxWindowToDraw 10000000 maxItems 1000000 color 0,114,178 visibility dense parent analyzable_regions-splicing bigDataUrl data-tracks/RNAseq/analyzable-regions_for_spliceAnalysis.sense.bb track analyzable_regions-splicing_antisense type bigBed shortLabel analyzable_regions-splicing_antisense longLabel regions with sufficient coverage to evaluate splice-junctions - antisense maxWindowToDraw 10000000 maxItems 1000000 color 213,94,0 visibility dense parent analyzable_regions-splicing bigDataUrl data-tracks/RNAseq/analyzable-regions_for_spliceAnalysis.antisense.bb